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Cell Profiler

CellProfiler is used for batch processing large image datasets. It makes use of ‘visual programming’ creating pipelines, there is limited command line scripting

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  • Useful for processing larger datasets, e.g. miniscreens, identically

  • Software specialising in segmentation and analysis of objects (e.g. cells and nuclei) within images and image stacks.

  • Can be used for tracking, counting, nuclear to cytoplasmic shuttling and more.

  • Can’t be used for 3D imaging.

Additional information