This is an open source flexible visualisation, processing and analysis tool developed by NIH. It is available as standard ImageJ or Fiji, which includes plugins.
Fiji / Image J is the most widely used software in our imaging facility. Its freely available, open source, scriptable and compatible with our Epifluorescence software.
Fiji is used for 2D image processing, including large datasets. It can measure, count, stitch, correlate and much more
Fiji has its own, Java compatible, scripting language. Facility scripts can be found on the facility Github page. Scripts can be published and distributed.
We have developed a range of videos for common applications in Fiji
Fiji is designed to be flexible, we use Fiji continually, to get the best from it please speak to the team. We regularly organise Fiji courses. See our twitter feed for more information.